Data · dataset · 2026
Data for: Principles of subclonal gene dosage across human cancers
Listed in Researchdata.se
The data shared here are joint single-cell Whole genome sequencing (WGS) and single-cell mRNA sequencing from primary patient material from different cancer types.
Description
Primary samples from pediatric acute lymphoblastic leukemias, acute myeloid leukemias, breast cancers, melanomas and sarcomas were processed using Direct nuclear tagmentation and RNA-sequencing (DNTR-seq). For more information on DNTR-seq, see ‘A Highly Scalable Method for Joint Whole-Genome Sequencing and Gene-Expression Profiling of Single Cells’, DOI:10.1016/j.molcel.2020.09.025.
Data shared here are the fastq files of all single cells sequenced in this study (21826 read 1 and 21826 read 2 files). The size of the dataset is approximately 2 TB.
Links
Where it is published
- DOI doi.org/10.48723/gr42-ja30 ↗
DOI / persistent id · from researchdata se
Catalogue records · 1
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- Inferred from text
- Cancer 75% · Genome sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Researchdata.se | oai:researchdata.se:2026-47/1 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/description |
| license_text | source · researchdata se | connector:researchdata_se@1.0.0 | |
| publication_date | source · researchdata se | connector:researchdata_se@1.0.0 | |
| spatial | source · researchdata se | connector:researchdata_se@1.0.0 | |
| title | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/title |