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Excel · study · 2026

The Agrobacterium fabrum efflux pump PecM serves as a critical metabolic relief valve to maintain cellular homeostasis

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Agrobacterium fabrum infects a wide range of plants, resulting in significant economic losses.

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In the rhizosphere, the bacterium is exposed to several stressors, including compounds secreted from other bacteria, fungi, or plants. A. fabrum encodes the efflux pump PecM for which the substrate is 4-hydroxybenzaldehyde, a compound that is both present in plant exudates and generated by the bacteria during degradation of aromatic compounds.

As an aromatic aldehyde, 4-hydroxybenzaldehyde is a chemically reactive electrophile that can react with cellular nucleophiles such as thiol groups on proteins and glutathione, leading to disruption of redox homeostasis. To assess physiological consequences of pecMdisruption, we compared transcriptome and proteome profiles of WT and pecM disruption strains. While 30 genes were seen to be differentially expressed in the pecM disruption strain, 118 proteins differentially accumulated.

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Accumulating proteins included glutathione S-transferase and glutathione-dependent peroxiredoxin, both of which protect from oxidative stress. Consistent with this observation, the pecM disrupted strain was more resistant to oxidative stress. Across the genes and proteins detected in both datasets, there was no overall linear relationship, as reflected in a Pearson correlation of ~0.

A marked depletion of bS21C, which is a component of the small ribosomal subunit was observed; as one of three paralogs, its differential expression suggests the possibility that ribosome heterogeneity is part of adaptation to stress. Taken together, our data suggest that absence of PecM imposes a 4-hydroxybenzaldehyde-induced oxidative or electrophile stress, and that PecM serves as a critical metabolic relief valve to maintain cellular homeostasis.

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Provenance · 1 source records, 7 field assertions
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NCBI GEOGSE32877814 d agoJSON v1
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access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3004enrichment · NCBI GEOtaxonomy-embedding@1.0.0title+keywords+description (69%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title