Data · collection · 2017
Whole genome sequencing of strain PAMC 20958 and one type strain of genus Halocynthiibacter.
Listed in NASA Earthdata CMR
A sediment sample collected from the coast of Svalbard, Arctic (78° 55' N, 11° 53' E).
Description
The sediment sample was suspended in 20 % glycerol and preserved at -80C until use. Strain PAMC 20958T was isolated by using standard dilution plating method on ZoBell agar containing 15 g bacto agar, 5 g bacto peptone, 1 g yeast extract, and 0.1 g ferric citrate in 1 L of 0.2-μm filtered seawater and incubating the plate at 10 C for 12 days.
After determination of the optimum growth temperature, strain PAMC 20958T was maintained routinely on Marine agar (MA; BD Difco) or in marine broth (MB; BD Difco) at 20 °C and preserved as glycerol suspensions (20 % in distilled water, v/v) at -80 °C. Reference strain H. namhaensis KCTC 32362T was obtained from the KCTC (Korean Collection for Type Cultures, Korea) and was maintained routinely on MA at 20 °C. Genome relatedness between PAMC 20958T and H. namhaensis KCTC 32362T was investigated by whole genome sequencing. -Analysis of Bacterial Community in coast of Svalbard, Arctic. -Basic data acquisition of PAMC(Polar and Alpine Microbial Collection). -Academic report of novel strain.
Links
Documentation and papers
- PROJECT HOME PAGE kpdc.kopri.re.kr ↗
project · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C2244298047-AMD_KOPRI.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C2244298047-AMD_KOPRI.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Cyanobacteria (Blue-Green Algae) · NOT APPLICABLE · NOT APPLICABLE
- Inferred from text
- Genome sequencing 75% · Sequencing 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C2244298047-AMD_KOPRI | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[instrument].gcmd_instrument:not-applicable | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/bacteria-archaea/cyanobacteria-blue-green-algae | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:not-applicable | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| created_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| updated_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |