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Data · collection · 2017

Whole genome sequencing of strain PAMC 20958 and one type strain of genus Halocynthiibacter.

Listed in NASA Earthdata CMR

A sediment sample collected from the coast of Svalbard, Arctic (78° 55' N, 11° 53' E).

Description

The sediment sample was suspended in 20 % glycerol and preserved at -80C until use. Strain PAMC 20958T was isolated by using standard dilution plating method on ZoBell agar containing 15 g bacto agar, 5 g bacto peptone, 1 g yeast extract, and 0.1 g ferric citrate in 1 L of 0.2-μm filtered seawater and incubating the plate at 10 C for 12 days.

After determination of the optimum growth temperature, strain PAMC 20958T was maintained routinely on Marine agar (MA; BD Difco) or in marine broth (MB; BD Difco) at 20 °C and preserved as glycerol suspensions (20 % in distilled water, v/v) at -80 °C. Reference strain H. namhaensis KCTC 32362T was obtained from the KCTC (Korean Collection for Type Cultures, Korea) and was maintained routinely on MA at 20 °C. Genome relatedness between PAMC 20958T and H. namhaensis KCTC 32362T was investigated by whole genome sequencing. -Analysis of Bacterial Community in coast of Svalbard, Arctic. -Basic data acquisition of PAMC(Polar and Alpine Microbial Collection). -Academic report of novel strain.

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Topics

Inferred from text
Genome sequencing 75% · Sequencing 75%
Provenance · 1 source records, 13 field assertions
SourceKeyLast seenRaw
NASA Earthdata CMRC2244298047-AMD_KOPRI13 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NASA CMRconnector:nasa_cmr@1.0.0
concepts[instrument].gcmd_instrument:not-applicablesource · NASA CMRconnector:nasa_cmr@1.0.0
concepts[measured_variable].gcmd:earth-science/biological-classification/bacteria-archaea/cyanobacteria-blue-green-algaesource · NASA CMRconnector:nasa_cmr@1.0.0
concepts[modality].local:modality:genome-sequencingenrichment · NASA CMRkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · NASA CMRkeyword-concept-rules@1.0.0title+description (75%)
concepts[platform].gcmd_platform:not-applicablesource · NASA CMRconnector:nasa_cmr@1.0.0
created_datesource · NASA CMRconnector:nasa_cmr@1.0.0
descriptionsource · NASA CMRconnector:nasa_cmr@1.0.0/umm/Abstract
publication_datesource · NASA CMRconnector:nasa_cmr@1.0.0
temporalsource · NASA CMRconnector:nasa_cmr@1.0.0/umm/TemporalExtents
titlesource · NASA CMRconnector:nasa_cmr@1.0.0/umm/EntryTitle
updated_datesource · NASA CMRconnector:nasa_cmr@1.0.0
version_labelsource · NASA CMRconnector:nasa_cmr@1.0.0