Imaging · dataset · 2026
Near-isotropic, aligned volume electron microscopy (eFIB-SEM) of mosquito stylet (jrc_mosquito-stylet-6)
Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.25378/janelia.33050051.v1
<p dir="ltr"><b>Sample</b>: Stylet from an adult female Aedes aegypti mosquito.<br><br><b>Sample Description</b>: A dataset featuring isotropic 3D electron microscopy data of a stylet from an adult female <i>Aedes aegypti</i> mosquito (jrc_mosquito-stylet-6).
Description
The stylet was dissected at approximately three-quarters length and immediately fixed in 2% glutaraldehyde and 4% formaldehyde in sodium cacodylate buffer. It was processed using a reduced osmium-thiocarbohydrazide-osmium protocol with en bloc uranyl acetate staining, dehydrated through an acetone series, embedded in Eponate 12 resin, and polymerized at 60°C for two days.
The sample was provided by Hilda Amalia Pasolli and Adriana Rosas (Vosshall Lab, HHMI / The Rockefeller University), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia).<br><br><b>Protocol</b>: The stylet was dissected at approximately three-quarters length and immediately fixed in 2% glutaraldehyde and 4% formaldehyde in sodium cacodylate buffer.
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It was processed using a reduced osmium-thiocarbohydrazide-osmium protocol with en bloc uranyl acetate staining, dehydrated through an acetone series, embedded in Eponate 12 resin, and polymerized at 60°C for two days. The selected sample was imaged by FIB-SEM at 8 nm isotropic resolution.<br><br><b>Contributions</b>: Sample provided by Hilda Amalia Pasolli (The Rockefeller University), prepared for imaging by Zhiyuan Lu (HHMI/Janelia) and imaged by Wei Qiu (HHMI/Janelia) and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).<br><br><b>Acquisition ID</b>: jrc_mosquito-stylet-6<br><br><b>Voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<br><br><b>Data dimensions (µm)</b>:<b> </b>50.88 x 44.23 x 295.02 (x, y, z)<br><br><b>Imaging start date</b>: 2025-08-12<br><br><b>Imaging duration (days)</b>: 55<br><br><b>Landing energy (eV)</b>: 1200<br><br><b>Imaging current (nA)</b>: 2.00<br><br><b>Scanning speed (MHz)</b>: 0.500<br><br><b>Dataset URL</b>: <a href="data.janelia.org/IVV6Rg" target="_blank" rel="noreferrer">s3://janelia-cosem-datasets/jrc_mosquito-stylet-6/jrc_mosquito-stylet-6.zarr/recon-1/em/</a><br><br><b>Visualization Website</b>: <a href="openorganelle.janelia.org/datasets/jrc_mosquito-stylet-6" target="_blank" rel="noreferrer noopener">openorganelle.janelia.org/datasets/jrc_mosquito-stylet-6</a><br><br><b>Publication</b>:<b> </b>Xu et al., 2017</p>
Links
Where it is published
- DOI doi.org/10.25378/janelia.33050051.v1 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Animal cell and molecular biology · Animal cell and molecular biology · Astronomy & Astrophysics · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Humanities · Humanities · Image processing · Image processing · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Microscopy · Microscopy · Molecular imaging · Molecular imaging · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science
- Inferred from text
- Imaging 75%
Provenance · 2 source records, 37 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33050051 | 4 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/33050051 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:field:310902 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Animal cell and molecular biology'] |
| concepts[field].anzsrc:field:310902 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Animal cell and molecular biology'] |
| concepts[field].anzsrc:field:340605 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Electron Microscopy'] |
| concepts[field].anzsrc:field:340605 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Electron Microscopy'] |
| concepts[field].anzsrc:field:460306 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Image processing'] |
| concepts[field].anzsrc:field:460306 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Image processing'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:imaging | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:microscopy | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Electron Microscopy'] |
| concepts[modality].local:modality:microscopy | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Electron Microscopy'] |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |