Data · dataset · 2013
Assessing potential metabolic capabilities of abundant microbes using metagenomic short-reads
Listed in DataCite
This fileset includes data from a single SOLiD sequencing run on a water sample taken from Puget Sound, WA.
Description
The sequences were checked for quality control and assembled into contigs prior to these analyses. The contigs were annotated using reference databases and separated by their taxonomic identification.
The top taxa were further analyzed to assess their potential metabolic capabiltiy by comparing the genes recovered to the KEGG gene maps of cultured organisms.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Assessing_potential_metabolic_capabilities_of… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.654768 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.654768 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.654768 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences
- From keywords
- Ecology · Microbiology
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.654768 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |