Data · dataset · 2026
<p>Distribution, SCR and parasite density across <i>Pfsa</i> genotypes of parasites infecting individuals with different HBB genotypes.</p>
Listed in ZivaHub
Description
<p><b>(A)</b> Numbers of samples with different parasite <i>Pfsa</i> genotypes across HBB genotypes. <b>(B)</b> Numbers of combinations of <i>Pfsa1, Pfsa3</i> and <i>hyp2</i> parasite genotypes in HbAS. <b>(C)</b> SCRs determined by <i>ev</i>SCA and parasite <i>Pfsa</i> genotype in HbAS. <b>(D)</b> Initial parasitemia at 0 hpc in samples used for <i>ev</i>SCA by parasite <i>Pfsa</i> genotype in HbAS. Statistical tests: Wilcoxon rank-sum test.
Given small sample sizes per group (<i>n</i> ≤ 3), the minimum achievable two-sided <i>p</i>-value (<i>n</i> = 3 <i>vs n</i> = 3, complete separation) is 0.1; <i>p</i>-values are reported for completeness but cannot reach conventional significance thresholds at this sample size. Low quality calls occurred at <i>hyp2, REX2, PTP7, Pfsa3</i>. Abbreviations: Hb, hemoglobin; HBB, human hemoglobin beta; <i>ev</i>SCAs, <i>ex vivo</i> sexual conversion assays; SCR, sexual conversion rate; + , positive (<i>P. falciparum</i> sickle-associated [Pfsa+] genotypes; -, negative (wildtype, not equal to reference for <i>Pfsa4</i>, <i>CLAG3.1</i>, <i>FIKK3</i>, and <i>PTP7</i>); + /-, mixed = two different alleles present; na, missing calls due to missing sequencing coverage.</p>
Links
Where it is published
- DOI doi.org/10.1371/journal.ppat.1014542.g005 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Bioinformatics and computational biology · Chemistry · Earth & Environmental Science · Genetics · Immunology · Infectious diseases · Life Sciences · Medicine & Health · Microbiology
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34027145 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].anzsrc:field:320211 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Infectious Diseases'] |
| concepts[field].anzsrc:group:3102 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Computational Biology'] |
| concepts[field].anzsrc:group:3105 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Genetics'] |
| concepts[field].anzsrc:group:3107 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Microbiology'] |
| concepts[field].anzsrc:group:3204 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Immunology'] |
| concepts[field].local:field:chemistry | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |