Data · dataset · 2026
Phylogeographic history of the ring distribution in Malcus flavidipes (Heteroptera: Malcidae) shaped by directional dispersal and island adaptation in the South China Sea region
Listed in ScienceDB
This study focuses on the yellow footed long stink bug (Malcus flavipes) distributed in the South China Sea.
Description
Based on simplified genome data and geographic distribution data, population genetics methods and species distribution models are used to systematically explore the mechanism of its distribution pattern formation and the evolutionary history of island populations. This study used a total of 199 samples, including 179 individuals of the yellow footed bundle long stink bug (24 populations) collected from the South China Sea region, as well as 20 individuals of the light colored bundle long stink bug (2 populations) as an outgroup.
Immediately store all samples in anhydrous ethanol after collection, and store them in a refrigerator at -20 ℃ until DNA extraction; The voucher specimen is kept at the Institute of Entomology, School of Life Sciences, Nankai University (NKU). We rely on the ipyrad program assembly process (API interface) to process Illumina raw sequencing data and screen SNP sites; The parameter setting adopts the de novo assembly mode, and the sequence clustering threshold is set to 0.85, in order to avoid the problem of homologous sequence clustering failure caused by base N, insertion deletion mutation (indel), sequencing errors, or sequence polymorphism.
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If the threshold is set too high; Phred score offset adopts the default value of 33; The maximum number of uncertain bases (N) in the filtered sequence is set to 5 (this parameter is the default value and it is not recommended to significantly increase it); Set the connector filtering level to 2 to strictly remove contamination issues caused by abnormal fragment length that mix connector sequences into ddRAD data; The constructed ddRAD dataset requires each gene locus to be present in at least 70% of individuals (a single locus allows 30% of individuals to have missing data), resulting in two datasets: (1) ALL70_SNP dataset: a SNP dataset containing all samples; (2) NOUT70-USNP dataset: A non linked SNP dataset of all samples after excluding outgroups.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.j00139.00351 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Ocean & Atmospheric Science · Social Science
- Inferred from text
- Biogeography and phylogeography 80% · Sequencing 75%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00139.00351 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:field:310402 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (80%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |