Data · dataset · 2014
SyntenyMapper - 25 species pairs
Listed in DataCite
This data represents SyntenyMapper results for 25 species pairs, including input data from ENSEMBL Compara, SyntenyMapper output and, for some species, visualization.
Description
SyntenyMapper is a tool for highly accurate detection of micro-rearranged regions within macro-rearranged synteny regions. For each species pair, four files are present: species1-species2-orthologs-v73.filtered: ENSEMBL Compara orthology relationships for protein-coding genes species1-species2-synteny-v73: ENSEMBL Compara synteny regions species1-species2-output_synteny-v73: SyntenyMapper output, refined synteny regions including micro-rearrangements species1-species2-output_mapping-v73: SyntenyMapper output, one-to-one mapping of orthologous genes, including reference to refined synteny regions (optional) species1-species2-visualization.tar: SyntenyMapper visualization of all synteny regions for the species pair, as html files with clickable gene labels and png files.
All ENSEMBL data is downloaded from version 73.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/SyntenyMapper_25_species_pairs/1192659 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1192659 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1192659 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1192659 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- From keywords
- Bioinformatics and computational biology · Genetics
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1192659 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |