Data · dataset · 2026
The haplotype-resolved assembly of Centella asiatica and its annotation file
Listed in ScienceDB
Extract genomic DNA with CTAB method and PacBio Sequel II platform was used to construct 15 kb DNA SMRTbell library.
Description
The circular consensus sequencing (CCS) was the raw sequencing data of the library. Hi-C data was sequenced using the platform of Illumina MGISEQ-T7.
SMRT Link (v9.0.0) and Fastp (v0.23.4) were used to generate CCS reads and clean Hi-C reads, respectively. Hifiasm (v0.19.9), Juicer (v2.13.07), 3d-DNA (v190716) and Juicerbox (v1.11.08) was used for genome assembly . GenomeThreader (v1.7.1), HISAT2 (v2.2.1), StringTie (v2.1.4), TransDecoder (v5.5.0), Trinity (v2.12.0), PASA (v2.5.2), Augustus (v3.3.3), and EVidenceModeler (v2.1.0) were used to predict gene structure annotation.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.j00210.00094 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Bioinformatics and computational biology 71% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.j00210.00094 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3102 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |