Omics · study · 2026
Phloem proteomics to identify small Open Reading Frame (sORF)-encoded peptides with a putative role in the control of flowering time in Arabidopsis
Listed in NCBI GEO
Phloem sap proteomic studies have previously revealed that phloem sap composition varies during development and upon floral induction.
Description
Specific proteins, lipids, messenger RNAs (mRNAs) and peptides have been shown to accumulate in different developmental stages. Peptides are of special interest since they have the potential to act as regulatory molecules controlling plant responses to environmental changes, such as salinity and water stress, plant-microbe interactions, and developmental changes.
In this context, we have characterised Arabidopsis phloem exudates to identify proteins and peptides with potential to control flowering time, acting as signals fine tuning plant development. In this work, we present the proteomic profiles of the phloem sap samples during floral transition along with the identification of interesting proteins and peptides that could have a role in the control of flowering. Among those, we have described the abundance pattern of the sORF1511 peptide in the phloem sap, which varies upon floral induction.
Read the rest (1 more)
We show that sORF1511 overexpression affects bolting time and alters the expression of several genes involved in the control of flowering time.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309559 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309559 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1336239 ncbi.nlm.nih.gov/bioproject/PRJNA1336239 ↗
project · from NCBI GEO
- PubMed 41937606 pubmed.ncbi.nlm.nih.gov/41937606 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Bioinformatics and computational biology 72% · Mass spectrometry 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309559 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:mass-spectrometry | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |