Data · dataset · 2026
CalCOFI October 2022 Vertebrate eDNA
Listed in GBIF
Samples used for this project were collected during a California Cooperative Oceanic Fisheries Investigations (CalCOFI) survey in October 2022.
Description
Samples were collected at 16 different stations in the southern CCE across varying depths with three different protocols: the NOAA Rockfish Recruitment and Ecosystem Assessment Survey (RREAS), the Global eDNA Marine Collection and Analysis Program (GEMCAP), and the NOAA-CalCOFI Ocean Genomics Project (NCOG) protocols.
All protocols were used at all stations. The sampling methods targeted similar depths with some variability (e.g. RREAS did not sample below 100m) and filtered different volumes of water. Sample volume ranged from 1 to 6L, with GEMCAP averaging approximately 1L, RREAS approximately 2L and NCOG approximately 4.5L per sample.
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All samples were generated with water from Niskin bottles mounted on a CTD rosette filtered through 0.2μm pore size filters within 1h of collection. The data include results from 12S rRNA (MiFish) and cetacean (control region d-loop) metabarcoding assays.
Links
Get the data
- Darwin Core Archive ipt-obis.gbif.us/archive.do?r=calcofi_october2022_edna ↗
download · from gbif
Where it is published
- GBIF dataset page gbif.org/dataset/10524092-539d-4ea4-8539-2e91ad8581a9 ↗
landing page · from gbif
- DOI doi.org/10.15468/n52j6r ↗
DOI / persistent id · from gbif
Documentation and papers
- Publisher page github.com/CalCOFI/eDNA_patch ↗
documentation · from gbif
Catalogue records · 1
- GBIF API api.gbif.org/v1/dataset/10524092-539d-4ea4-8539-2e91ad8581a9 ↗
metadata API · from gbif
Topics
- From keywords
- Life Sciences · Mammalia
- Inferred from text
- Zoology 69%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| GBIF | 10524092-539d-4ea4-8539-2e91ad8581a9 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · gbif | connector:gbif@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · gbif | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · gbif | connector:gbif@1.0.0 | |
| concepts[organism].NCBITaxon:40674 | mapping · gbif | vocabulary-mapper@1.0.0 | keywords['Mammalia'] |
| created_date | source · gbif | connector:gbif@1.0.0 | |
| description | source · gbif | connector:gbif@1.0.0 | /description |
| license | source · gbif | connector:gbif@1.0.0 | |
| publication_date | source · gbif | connector:gbif@1.0.0 | |
| spatial | source · gbif | connector:gbif@1.0.0 | |
| temporal | source · gbif | connector:gbif@1.0.0 | |
| title | source · gbif | connector:gbif@1.0.0 | /title |
| updated_date | source · gbif | connector:gbif@1.0.0 |