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Data · dataset · 2026

CalCOFI October 2022 Vertebrate eDNA

Listed in GBIF

Samples used for this project were collected during a California Cooperative Oceanic Fisheries Investigations (CalCOFI) survey in October 2022.

Description

Samples were collected at 16 different stations in the southern CCE across varying depths with three different protocols: the NOAA Rockfish Recruitment and Ecosystem Assessment Survey (RREAS), the Global eDNA Marine Collection and Analysis Program (GEMCAP), and the NOAA-CalCOFI Ocean Genomics Project (NCOG) protocols.

All protocols were used at all stations. The sampling methods targeted similar depths with some variability (e.g. RREAS did not sample below 100m) and filtered different volumes of water. Sample volume ranged from 1 to 6L, with GEMCAP averaging approximately 1L, RREAS approximately 2L and NCOG approximately 4.5L per sample.

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All samples were generated with water from Niskin bottles mounted on a CTD rosette filtered through 0.2μm pore size filters within 1h of collection. The data include results from 12S rRNA (MiFish) and cetacean (control region d-loop) metabarcoding assays.

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Documentation and papers

Catalogue records · 1

Topics

From keywords
Life Sciences · Mammalia
Inferred from text
Zoology 69%
Provenance · 1 source records, 12 field assertions
SourceKeyLast seenRaw
GBIF10524092-539d-4ea4-8539-2e91ad8581a95 d agoJSON v1
FieldAssertionExtractorEvidence
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concepts[field].anzsrc:group:3109enrichment · gbiftaxonomy-embedding@1.1.0title+keywords+description (69%)
concepts[field].local:field:life-sciencesmapping · gbifconnector:gbif@1.0.0
concepts[organism].NCBITaxon:40674mapping · gbifvocabulary-mapper@1.0.0keywords['Mammalia']
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