Data · dataset · 2014
Processed NOMe-seq data for four human cell lines
Listed in Zenodo
Description
Raw NOME-seq data (Gene Expression Omnibus accession GSE57498) for the human cell lines HMEC, MCF7, PrEC, PC3 were aligned to hg19 using bwa-meth. Methylation and occupancy calls were made at WCG and GCH sites respectively using bwa-meth, BisSNP and bespoke, tailor made scripts (github.com/astatham/NOMe-seq-analysis).
Links
Get the data
- bigTable.WCG.tsv.gz zenodo.org/api/records/12454/files/bigTable.WCG.tsv.gz/content ↗
download · from Zenodo
- bigTable.GCH.tsv.gz zenodo.org/api/records/12454/files/bigTable.GCH.tsv.gz/content ↗
download · from Zenodo
Where it is published
- Zenodo record zenodo.org/records/12454 ↗
landing page · from Zenodo
- DOI doi.org/10.5281/zenodo.12454 ↗
DOI / persistent id · from Zenodo
Documentation and papers
- IsSupplementTo 10.1101/gr.163485.113 doi.org/10.1101/gr.163485.113 ↗
publication · from Zenodo
Catalogue records · 1
- Zenodo API zenodo.org/api/records/12454 ↗
metadata API · from Zenodo
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Zenodo | 12454 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Zenodo | connector:zenodo@1.0.0 | /metadata/access_right |
| byte_size | source · Zenodo | connector:zenodo@1.0.0 | |
| created_date | source · Zenodo | connector:zenodo@1.0.0 | |
| description | source · Zenodo | connector:zenodo@1.0.0 | /metadata/description |
| license | source · Zenodo | connector:zenodo@1.0.0 | /metadata/license |
| publication_date | source · Zenodo | connector:zenodo@1.0.0 | |
| title | source · Zenodo | connector:zenodo@1.0.0 | /metadata/title |
| updated_date | source · Zenodo | connector:zenodo@1.0.0 |