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Data · dataset · 2026

<p>Inclusivity in global research questionnaire.</p>

Listed in ZivaHub and Deakin Research Online and DMU Figshare and UCL Research Data Repository — shown once because both records carry DOI 10.1371/journal.pgph.0007133.s022

<div><p>Serological data provide important insights into SARS-CoV-2 transmission and immunity, particularly in regions with limited routine surveillance such as sub-Saharan Africa.

Description

However, antibody waning and boosting following reinfection or vaccination remain poorly characterised, complicating interpretation of serological measurements. Improved understanding of these dynamics is critical for accurate epidemiological inference.

Modelling longitudinal serological data provides a means to quantify antibody kinetics and reconstruct infection histories. We analysed 15,679 neutralising antibody (nAb) titres from 1,675 unvaccinated, HIV-uninfected participants in urban (Lilongwe) and rural (Karonga) Malawi (February 2021–April 2022). NAb titres against ancestral B.1, Beta, Delta, and Omicron (BA.1/BA.2) viruses were measured using an HIV-based SARS-CoV-2 pseudotyped virus neutralisation assay.

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A multi-level Bayesian model was used to reconstruct infection histories and antibody kinetics. The model identified 429 infections (95% credible interval 417–441), including 39 (9.1%) that had not been identified by traditional seroconversion-based thresholds. Antibody levels waned rapidly, with 48% (0.403–0.560) of the acute boost remaining after three months and only 5% (0.027–0.098) after one year.

Pre-Omicron infections generated stronger antibody boosts than Omicron infections. Responses varied, with individuals clustering into low and high responders. Cross-reactive responses extended across substantial antigenic distances - Omicron infections induced broader immunity.

Seroincidence was higher in Lilongwe than in Karonga (0.41 vs. 0.27 infections per person per three months), driven by the early 2022 Omicron wave. Reinfections were common, particularly among adults and urban residents. SARS-CoV-2 nAb responses following infection were heterogeneous and declined rapidly.

This rapid waning underscores the importance of vaccination for sustained protection, while cross-reactivity suggests only partial immunity from prior variants. Identifying reinfections is essential for understanding transmission and finding populations at higher repeat infection risk, particularly where routine surveillance is limited.</p></div>

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Inferred from text
Longitudinal study 65%

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Provenance · 4 source records, 54 field assertions
SourceKeyLast seenRaw
ZivaHuboai:figshare.com:article/340474517 d agoJSON v1
Deakin Research Onlineoai:figshare.com:article/340474517 d agoJSON v1
DMU Figshareoai:figshare.com:article/340474517 d agoJSON v1
UCL Research Data Repositoryoai:figshare.com:article/340474516 d agoJSON v1
FieldAssertionExtractorEvidence
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concepts[disease].local:disease:cancermapping · dro deakin edu auvocabulary-mapper@1.0.0keywords['Cancer']
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concepts[field].anzsrc:field:310706mapping · dro deakin edu auvocabulary-mapper@1.0.0keywords['Virology']
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concepts[field].anzsrc:field:320211mapping · figshare dmu ac ukvocabulary-mapper@1.0.0keywords['Infectious Diseases']
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concepts[field].anzsrc:field:320211mapping · dro deakin edu auvocabulary-mapper@1.0.0keywords['Infectious Diseases']
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concepts[field].local:field:mathematics-statisticsmapping · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare dmu ac ukconnector:figshare_dmu_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · rdr ucl ac ukconnector:rdr_ucl_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · zivahub uct ac zaconnector:zivahub_uct_ac_za@1.0.0
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