Data · dataset · 2013
Lillis Dust Sequencing Data
Listed in DataCite
16S sequence data and metadata sampled from dust in rooms in the Lillis Hall building at the Unviersity of Oregon.
Description
Three sets of files are included in this data archive. dust_mapping.txt - a tab-delimited mapping file for use with QIIME software. Includes information on primer and barcode sequences associated with each sample. *** note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used - the first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read.
The barcodes will need to be combined into a single 12bp construct prior to parsing into samples. dust_metadata.txt - a tab-delimited file containing metadata associated with each sample. dust_metadata_description.txt - a tab-delimited file with description of each column in the metadata file. dust.fastq.tgz.part-xx - raw sequence data in FASTQ format, produced by two sequencing runs using Illumina MiSeq 150bp paired-end.
Read the rest (1 more)
Due to file size limitations, the original tar/gzip archive has been split into seven parts. To recombine and uncompress the sequence files, the following command works in a Linux/Unix environment: cat dust.fastq.tgz.part-a*| tar xz
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Lillis_Dust_Sequencing_Data/709596 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.709596 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.709596 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.709596 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- From keywords
- Ecology · Microbiology
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.709596 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |