Data from: QST FST comparisons with unbalanced half-sib designs

We extend this approach to (1) allow for a model more suitable for some plant populations or breeding designs in which offspring are related through mothers (assuming independent fathers for each offspring; half-sibs by dam), and (2) by explicitly allowing for unbalanced data sets. The resulting approach is made available through the R package QstFstComp.

Usage notes

SourceCode_DamModel Source code used when doing type I error testing of balanced or unbalanced half-sib dam model DamModel_WorkingCopy.R SireModel_WorkingCopy Source code used when doing type I error testing of unbalanced half-sib sire model TypeI_ErrorTest_DamBalanced R code to run the error testing of the balanced half-sib dam model over 1000 replicate datasets. TypeI_ErrorTest_DamUnbalanced R code to run the error testing of the unbalanced half-sib dam model over 1000 replicate datasets.

TypeI_ErrorTest_SireUnbalanced R code to run the error testing of the unbalanced half-sib sire model over 1000 replicate datasets. NemoReplicates Zipped file containing the 1000 simulated replicate datasets from Nemo used for type I error testing.