Table · dataset · 2026
Decomposing the pan-cancer ecDNA association: code and derived data
Listed in HKU DataHub and figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.34007751.v1
<p dir="ltr">Code and derived data for the manuscript "Decomposing the pan-cancer ecDNA association: cancer-type composition, label-proximal features, and the residual signal" (submitted to Briefings in Bioinformatics, 2026).
Description
Contents: code/ (analysis scripts; Python 3.10, scikit-learn 1.0.2; R 4.2.0, survival 3.5-7, coxphf); data/ (patient-level, de-identified cohort label tables and feature matrices; TCGA barcodes are public sample IDs); results_modeling/ (model metrics, predictions, benchmarks, and supplementary analyses; JSON/TSV).
Source data are NOT included and must be downloaded from public repositories: AmpRepo (ampliconrepository.org) TCGA/PCAWG/CCLE amplicon classifications; NCI GDC (portal.gdc.cancer.gov) TCGA RNA-seq/MAF/CNV/clinical; ICGC ARGO open bucket PCAWG expression/CNV/SNV; Broad Institute CCLE 2018 RSEM TPM; DepMap 24Q4. Contact: wangt_zsyy@126.com</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.34007751.v1 ↗
DOI / persistent id · from datahub hku hk
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from datahub hku hk
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Humanities · Humanities · Life Sciences · Life Sciences · Machine learning · Machine learning · Machine learning · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science · Translational and applied bioinformatics · Translational and applied bioinformatics · Translational and applied bioinformatics
- Inferred from text
- Cancer 75% · RNA sequencing 65%
Provenance · 3 source records, 39 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| HKU DataHub | oai:figshare.com:article/34007751 | 12 d ago | JSON v1 |
| figshare | oai:figshare.com:article/34007751 | 12 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34007751 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · datahub hku hk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:310208 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310208 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310208 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:group:4611 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['machine learning'] |
| concepts[field].anzsrc:group:4611 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['machine learning'] |
| concepts[field].anzsrc:group:4611 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['machine learning'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · datahub hku hk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/description |
| license | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/rights |
| publication_date | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| title | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/title |