Table · dataset · 2016
Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network
Listed in LSHTM Data Compass
Data supporting a publication on use of Bacterial whole-genome sequencing (WGS) to identify transmission of vancomycin-resistant enterococci (VRE) within a long-term care facility (LTCF) and acute hospital in the United Kingdom.
Description
It includes a list of accession numbers assigned to study isolates submitted to the European Nucleotide Archive, as well as a phylogenetic tree of the 51 VRE and 25 VSE isolates based on core genome SNPs.
Links
Where it is published
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/177/1/Isolates_Accession_Number.csv ↗
landing page · from lshtm ac uk
- LSHTM Data Compass record datacompass.lshtm.ac.uk/id/eprint/177/2/Phylogeny_figure.pdf ↗
landing page · from lshtm ac uk
- DOI doi.org/10.6084/m9.figshare.c.3641945_d1.v1 ↗
DOI / persistent id · from lshtm ac uk
Catalogue records · 1
- OAI-PMH record datacompass.lshtm.ac.uk/cgi/oai2?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3… ↗
metadata API · from lshtm ac uk
Topics
- From keywords
- Earth & Environmental Science · Humanities · Life Sciences · Medicine & Health · Social Science
- Inferred from text
- Genome sequencing 65% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| LSHTM Data Compass | oai:datacompass.lshtm.ac.uk:177 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · lshtm ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · lshtm ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | |
| title | source · lshtm ac uk | connector:lshtm_ac_uk@1.0.0 | /metadata/dc/title |