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Omics · study · 2026

Effect of depletion of UPL3 on gene expression in Arabidopsis siliques

Listed in NCBI GEO

Arabidopsis seeds release large capsules of mucilaginous polysaccharides, whose adherence necessitates not only cellulose and hemicellulose biosynthesis but also their interactions.

Description

However, the proteins regulating this connection in the seed coat epidermis still need clarification. Through reverse genetics, we demonstrate that UBIQUITIN-PROTEIN LIGASE 3 (UPL3), a nucleus-localized, HECT E3 ligase protein, positively regulates the formation of cellulosic rays in seed coat mucilage.

Disruption of UPL3 results in an enlarged seed mucilage halo due to elongated, diffusely stained cellulose structures, while not affecting the biosynthesis, structure, and chemical composition of pectic polymers. Furthermore, the distribution, rather than the biosynthesis, of xylans is significantly affected in upl3 seeds. Genetic analysis revealed that upl3 partially suppresses the mucilage defects of cellulose synthase 5 (cesa5) and completely rescues those of irregular xylem 7 (irx7), but not mucilage modified 5 (mum5) and irx14.

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Our findings indicate that UPL3 is crucial for maintaining cellulose and mucilage structure by ensuring the correct organization of xylans and cellulose-xylan interactions, shedding new light on the mechanisms underlying xylan biosynthesis.

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Life Sciences
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Biochemistry and cell biology 70%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE27528112 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3101enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[organism].NCBITaxon:3702source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title