Omics · study · 2026
Effect of depletion of UPL3 on gene expression in Arabidopsis siliques
Listed in NCBI GEO
Arabidopsis seeds release large capsules of mucilaginous polysaccharides, whose adherence necessitates not only cellulose and hemicellulose biosynthesis but also their interactions.
Description
However, the proteins regulating this connection in the seed coat epidermis still need clarification. Through reverse genetics, we demonstrate that UBIQUITIN-PROTEIN LIGASE 3 (UPL3), a nucleus-localized, HECT E3 ligase protein, positively regulates the formation of cellulosic rays in seed coat mucilage.
Disruption of UPL3 results in an enlarged seed mucilage halo due to elongated, diffusely stained cellulose structures, while not affecting the biosynthesis, structure, and chemical composition of pectic polymers. Furthermore, the distribution, rather than the biosynthesis, of xylans is significantly affected in upl3 seeds. Genetic analysis revealed that upl3 partially suppresses the mucilage defects of cellulose synthase 5 (cesa5) and completely rescues those of irregular xylem 7 (irx7), but not mucilage modified 5 (mum5) and irx14.
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Our findings indicate that UPL3 is crucial for maintaining cellulose and mucilage structure by ensuring the correct organization of xylans and cellulose-xylan interactions, shedding new light on the mechanisms underlying xylan biosynthesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE275nnn/GSE275281 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE275281 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1150171 ncbi.nlm.nih.gov/bioproject/PRJNA1150171 ↗
project · from NCBI GEO
Topics
- Stated by source
- Arabidopsis thaliana · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 70%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE275281 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:3702 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |