Omics · study · 2026
Blue-light associated transcriptomic response in Trichoderma harzianum
Listed in NCBI GEO
This study investigated the transcriptomic response of Trichoderma harzianum to blue light.
Description
Mycelial samples cultured under darkness and blue LED light conditions were analyzed by mRNA sequencing. A pooled de novo transcriptome assembly was generated using Trinity, and transcript/gene abundance was estimated using Salmon.
Processed matrices include gene- and isoform-level counts and TPM values, together with the Trinity transcriptome assembly and candidate annotation tables.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE334nnn/GSE334040 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334040 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1473635 ncbi.nlm.nih.gov/bioproject/PRJNA1473635 ↗
project · from NCBI GEO
- PubMed 42651694 pubmed.ncbi.nlm.nih.gov/42651694 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Evolutionary biology 69% · Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE334040 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |