Omics · dataset · 2025
Leishmania donovani (strain HU3) sequencing reads generated from total RNA by Oxford Nanopore technology
Listed in e-cienciaDatos
This project was aimed to sequence total RNA from Leishmania donovani promastigotes using the Oxford Nanopore Technology (ONT) methodology.
Description
This dataset consists of two Fastq files, generated by MinION Mk1C (ONT) MC-114562 device. Basecalling was performed with MinKNOW (ONT) software model version rma002_70bps_hac@v3, with firmware MinION FPGA 2.4.3, ver. 23.07.12.
These files are labelled: Ld_RNA_ONT_28Ene25_full.fastq, this file contains 856,604 reads having an average q-score of 7 or higher Ld_RNA_ONT_28Ene25_FAIL_full.fastq, this file contains 15,466 reads that did not pass the filter
Links
Where it is published
- Dataverse dataset page edatos.consorciomadrono.es/dataset.xhtml?persistentId=doi%3A10.21950%2FQ0IYBJ ↗
landing page · from edatos consorciomadrono es
- DOI doi.org/10.21950/q0iybj ↗
DOI / persistent id · from edatos consorciomadrono es
Catalogue records · 1
- Dataverse API edatos.consorciomadrono.es/api/datasets/:persistentId/?persistentId=doi%3A10.21950%2FQ0IY… ↗
metadata API · from edatos consorciomadrono es
Topics
- Stated by source
- Ciencias médicas, de la salud y de la vida
- From keywords
- Medicine & Health · RNA sequencing
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| e-cienciaDatos | doi:10.21950/Q0IYBJ | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:ciencias-m-dicas-de-la-salud-y-de-la-vida | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[modality].local:modality:rna-seq | mapping · edatos consorciomadrono es | vocabulary-mapper@1.0.0 | keywords['RNA sequencing'] |
| concepts[modality].local:modality:sequencing | enrichment · edatos consorciomadrono es | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| description | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /description |
| publication_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| title | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /name |
| updated_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| version_label | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 |