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Data · dataset · 2018

Replication Data for: Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics

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Data files generated within the project described in the paper: “Expressed protein profile of a “Candidatus Entotheonella”-like bacterium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics”.

Description

Data is organized in two zip archives and 2_Processed_data.zip. Contents of the archives 1_Raw_data.zip: The directory peaks_exports contains the information related to the de novo sequencing of the peptides.

There is one subdirectory for each sample (10 in total). Each sample subdirectory contains 5 files: DB search psm.csv: Output of the database search including post-translational modifications (PTM) de novo only peptides.csv: Features of de novo peptides only peptide.csv: Features of peptides identified protein-peptides.csv: Features of peptides matching proteins in the database proteins.csv: Features of all identified proteins 2_Processed_data.zip: The archive contains two subfolders: 1_Assemblies_databases: Metagenomic assemblies (contigs > 1 Kbp) used as a database for matching sequenced peptides.

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There are two, one for the sponge aply_sponge_1k_aa.faa, and one for the seawater sw_1k_aa.faa 2_Protein_fastas: Includes the actual input for the analyses presented, and similarly is divided into two subfolders: Seawater_Mediterranean, containing four files, one for each seawater sample analyzed; and Sponge_Aplysina_aerophoba which includes six files, one for each sponge sample analyzed. All files are named according to sample identifiers provided in the manuscript, namely: DB search psm.csv: Output of the database search including post-translational modifications (PTM) proteins_16B.fasta (Sponge Aplysina aerophoba) proteins_16C.fasta (Sponge Aplysina aerophoba) proteins_17.fasta (Sponge Aplysina aerophoba) proteins_19A.fasta (Sponge Aplysina aerophoba) proteins_19B.fasta (Sponge Aplysina aerophoba) proteins_25.fasta (Sponge Aplysina aerophoba) proteins_sw5.fasta (Mediterranean seawater) proteins_sw6.fasta (Mediterranean seawater) proteins_sw7.fasta (Mediterranean seawater) proteins_sw8.fasta (Mediterranean seawater)

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Catalogue records · 1

Topics

Stated by source
Earth and Environmental Sciences
From keywords
Earth & Environmental Science · Ocean & Atmospheric Science
Inferred from text
Environmental biotechnology 70% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
IISH Dataversedoi:10.34894/GOGWGH12 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[field].anzsrc:group:4103enrichment · datasets iisg amsterdamtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].dataverse_subject:earth-and-environmental-sciencessource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0/subjects
concepts[field].local:field:earth-environmentalmapping · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0/subjects
concepts[field].local:field:ocean-atmosphericmapping · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0/subjects
concepts[modality].local:modality:sequencingenrichment · datasets iisg amsterdamkeyword-concept-rules@1.0.0title+description (75%)
created_datesource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0
descriptionsource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0/description
publication_datesource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0
titlesource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0/name
updated_datesource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0
version_labelsource · datasets iisg amsterdamconnector:datasets_iisg_amsterdam@1.0.0