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Data · dataset · 2014

Sparse Biclustering of Transposable Data

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We consider the task of simultaneously clustering the rows and columns of a large transposable data matrix.

Description

We assume that the matrix elements are normally distributed with a bicluster-specific mean term and a common variance, and perform biclustering by maximizing the corresponding log-likelihood. We apply an ℓ 1 penalty to the means of the biclusters to obtain sparse and interpretable biclusters.

Our proposal amounts to a sparse, symmetrized version of k -means clustering. We show that k -means clustering of the rows and of the columns of a data matrix can be seen as special cases of our proposal, and that a relaxation of our proposal yields the singular value decomposition. In addition, we propose a framework for biclustering based on the matrix-variate normal distribution.

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The performances of our proposals are demonstrated in a simulation study and on a gene expression dataset. This article has supplementary material online.

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Provenance · 2 source records, 21 field assertions
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DataCite10.6084/m9.figshare.120969914 d agoJSON v1
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