Data · dataset · 2025
CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Madagascar
Listed in GBIF and Researchdata.se — shown once because both records carry DOI 10.15468/6u5rum
Amplicon Sequence Variants of 418bp of CO1 from mild lysed arthropod community samples collected with Malaise traps from the Insect Biome Atlas project in Sweden, as described in the IBA data paper .
Description
This dataset was published via the SBDI ASV portal , and has been updated from 'Metadata only' to 'Occurrence' type. Occurrence data were compiled from the following IBA Figshare items: Processed ASV data from the Insect Biome Atlas Project v3: cleaned_noise_filtered_cluster_taxonomy_MG.tsv.gz spikeins_tax_MG.tsv.gz Amplicon sequence variants from the Insect Biome Atlas project v6: CO1_asv_counts_MG.tsv.gz CO1_asv_seqs_MG.fasta.gz The following samples were excluded from this resource due to sequencing failure: P26762_1247, P26762_1333, P27359_1207, P27361_1307, P27361_1148; or lack of non-zero counts for annotated ASVs: P27359_2998, P27361_1125, P27360_1032.
Links
Get the data
- Darwin Core Archive gbif.se/ipt/archive.do?r=iba_co1_lysate_2019_mg ↗
download · from gbif
Where it is published
- GBIF dataset page gbif.org/dataset/bb3ce407-964b-411a-90ce-d42b394dd646 ↗
landing page · from gbif
- DOI doi.org/10.15468/6u5rum ↗
DOI / persistent id · from gbif
Documentation and papers
- Publisher page insectbiomeatlas.org ↗
documentation · from gbif
Catalogue records · 2
- GBIF API api.gbif.org/v1/dataset/bb3ce407-964b-411a-90ce-d42b394dd646 ↗
metadata API · from gbif
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- From keywords
- Earth & Environmental Science · Life Sciences · Life Sciences
- Inferred from text
- Evolutionary biology 72% · Sequencing 75%
Provenance · 2 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| GBIF | bb3ce407-964b-411a-90ce-d42b394dd646 | 12 d ago | JSON v1 |
| Researchdata.se | oai:researchdata.se:gbif-sweden-10-15468-6u5rum/0 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · gbif | connector:gbif@1.0.0 | |
| concepts[field].anzsrc:group:3104 | enrichment · gbif | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · gbif | connector:gbif@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · gbif | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · gbif | connector:gbif@1.0.0 | |
| description | source · gbif | connector:gbif@1.0.0 | /description |
| license | source · gbif | connector:gbif@1.0.0 | |
| publication_date | source · gbif | connector:gbif@1.0.0 | |
| spatial | source · gbif | connector:gbif@1.0.0 | |
| temporal | source · gbif | connector:gbif@1.0.0 | |
| title | source · gbif | connector:gbif@1.0.0 | /title |
| updated_date | source · gbif | connector:gbif@1.0.0 |