Data · dataset · 2026
Genome annotation of Manihot esculenta (cassava)
Listed in bonndata
The genome annotation of 11 Manihot esculenta (cassava) cultivars retrieved from the NCBI genome database.
Description
We predicted gene models using the homology-based annotation tool GeMoMa, using Jatropha curcas and Hevea brasiliensis, both close relatives of cassava within the Euphorbiaceae, as reference gene models. This annotation resource was generated to support a comparative genomics investigation into the genetic basis of intraspecific pigmentation differences in cassava, with a particular focus on the MYB-bHLH-WD40 (MBW) regulatory complex controlling anthocyanin biosynthesis (R2R3-MYB and R3-MYB activators/repressors and their bHLH partners).
This data publication contains the coding sequences, predicted polypeptide sequences, and structural annotations (GFF3) for each of the 11 cultivars.
Links
Where it is published
- Dataverse dataset page bonndata.uni-bonn.de/dataset.xhtml?persistentId=doi%3A10.60507%2FFK2%2FIHEIMY ↗
landing page · from bonndata uni bonn de
- DOI doi.org/10.60507/fk2/iheimy ↗
DOI / persistent id · from bonndata uni bonn de
Catalogue records · 1
- Dataverse API bonndata.uni-bonn.de/api/datasets/:persistentId/?persistentId=doi%3A10.60507%2FFK2%… ↗
metadata API · from bonndata uni bonn de
Topics
- Stated by source
- Agricultural Sciences · Medicine, Health and Life Sciences · Other
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Genetics 70%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| bonndata | doi:10.60507/FK2/IHEIMY | 6 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3105 | enrichment · bonndata uni bonn de | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].dataverse_subject:agricultural-sciences | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /subjects |
| concepts[field].dataverse_subject:other | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /subjects |
| created_date | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | |
| description | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /description |
| publication_date | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | |
| title | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | /name |
| updated_date | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 | |
| version_label | source · bonndata uni bonn de | connector:bonndata_uni_bonn_de@1.0.0 |