Data · dataset · 2023
Bond dissociation energies of X−H bonds in proteins [data]
Listed in heiDATA
Knowledge of reliable X−H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins.
Description
X−H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels of theory. The density functional theory values agree well with the composite- level calculations.
By this high level of theory, combined with a careful choice of reference compounds and peptide model systems, our work provides a highly valuable data set of bond dissociation energies with unprecedented accuracy and comprehensiveness. It will likely prove useful to predict protein biochemistry involving radicals, e.g., by machine learning.
Links
Where it is published
- Dataverse dataset page heidata.uni-heidelberg.de/dataset.xhtml?persistentId=doi%3A10.11588%2FDATA%2FAA3UAQ ↗
landing page · from heidata uni heidelberg de
- DOI doi.org/10.11588/data/aa3uaq ↗
DOI / persistent id · from heidata uni heidelberg de
Catalogue records · 1
- Dataverse API heidata.uni-heidelberg.de/api/datasets/:persistentId/?persistentId=doi%3A10.11588%2FDATA… ↗
metadata API · from heidata uni heidelberg de
Topics
- Stated by source
- Chemistry
- Inferred from text
- Density functional theory 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| heiDATA | doi:10.11588/DATA/AA3UAQ | 17 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:chemistry | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | /subjects |
| concepts[field].local:field:energy | mapping · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | /subjects |
| concepts[method].local:method:dft | enrichment · heidata uni heidelberg de | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | |
| description | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | /description |
| publication_date | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | |
| title | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | /name |
| updated_date | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 | |
| version_label | source · heidata uni heidelberg de | connector:heidata_uni_heidelberg_de@1.0.0 |