Data · dataset · 2022
Early experience of adopting a generative diffusion model for the synthesis of fundus photographs
Listed in Teesside University Research Data Repository
This study was based on a publicly accessible and deidentified FP image database, which was released by a previous study.
Description
To reduce the noise of different borders, we selected FPs where all boundaries of the circular mask were intact. Finally, 1000 FPs were used to train the diffusion model.
Therefore, this study was exempt from ethical review according to the guidelines by Korea National Institute for Bioethics Policy. All the procedures were performed in accordance with the ethical standards of the 1964 Declaration of Helsinki and its later amendments. As shown in Figure 1, we trained the DDPM based on U-Net backbone architecture, which is the most popular form of generative diffusion model.
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After training, serial multiple denoising U-Nets can generate FPs using random noise seeds. The input image size was set to a pixel resolution of 128 × 128. This was the maximum resolution required to finalize the proper training with our computational resources.
We set the time step to the default value of 1000 because fewer numbers produce severely noisy or blurred synthetic images. All codes for the implementation of the DDPM are available on the webpage (github.com/lucidrains/denoising-diffusion-pytorch). For reproducibility, our FP images and modified codes, which can be implemented in Google Colaboratory, were released in the data repository.
Links
Where it is published
- DOI doi.org/10.17632/fm4m8kr6cz.2 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science
- Inferred from text
- Image 75%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/fm4m8kr6cz.2 | 15 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |