Data · dataset · 2014
Software and database resource mentions across the whole of PubMed Central full-text articles
Listed in DataCite
This is a compressed .sql.gz file of a MySQL database dump.
Description
The table contains the automatically extracted mentions of database and software resource names as extracted by bioNerDS across the full sub-set of open-access full-text PubMed Central articles. Each matched resource is identified by name, text offsets and "normalised" name, and also includes details of the rules from which the name was matched.
This dataset is one of the primary research contributions of my PhD work, and a paper currently being finalised for submission to PLoS Computational Biology.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Software_and_database_resource_mentions_acros… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1281371 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1281371 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1281371 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
- From keywords
- Bioinformatics and computational biology
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1281371 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:text | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |