Data · dataset · 2024
Chromosome-level genome assemblies of the migratory locust and the desert locust
Listed in ScienceDB
A combination of three sequencing technologies including long-read sequencing (PacBio Sequel), optical mapping (Bionano Saphyr), and chromosome conformation capture technique based on proximity ligation (Hi-C) was applied to construct the chromosome-level genome assembly of the migratory locust (Locusta migratoria).
Description
Moreover, short-read DNA-seq (Illumina Data) both from female and male locusts was used to correct assembly errors.
To predict protein-coding genes, we further generated short-read RNA-seq and PacBio ISO-seq cDNA data obtained from 11 different tissues and organs of the migrator locust. To track the chromosome dynamics of X chromosome within Orthoptera, we also generated a chromosome-level genome of the desert locust (Schistocerca gregaria) using Nanopore long-read sequencing and Illumina data with Hi-C scaffolding.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.15642 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Genetics 72% · RNA sequencing 65% · Sequencing 75%
Related
- Possibly the same asChromosome-level genome assemblies of the migratory locust and the desert locust
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.15642 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (72%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/rights |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |