Data · collection · 2018
Heat stress gene expression in three notothenioid species
Listed in NASA Earthdata CMR
The datasets were cDNA sequence reads generated from Illumina HySeq2500 sequencing of reverse transcribed RNA derived from three notothenioid fish species.
Description
The sequence data are raw reads from the sequencer that anyone can use and analyze using their own bioinformatics tool set. The three species were heat stressed with the same protocol, and gene expression induced by the stress was examined for the gill tissue, and comprise part of the data set.
A multi-tissue transcriptome was also generated for each species for use in mapping the experimental gill sequence reads to quantify levels of all expressed genes. This comprise the rest of the data set.
Links
Get the data
- GET DATA ncbi.nlm.nih.gov ↗
download · from NASA CMR
Catalogue records · 2
- CMR record cmr.earthdata.nasa.gov/search/concepts/C1214598815-SCIOPS.html ↗
catalogue entry · from NASA CMR
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C1214598815-SCIOPS.umm_json ↗
metadata API · from NASA CMR
Topics
- Stated by source
- Fish · Not provided
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C1214598815-SCIOPS | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/animals-vertebrates/fish | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |