Data · dataset · 2014
Peanut_denovo_transcriptome_assembly_methods_comparison_PLosOne
Listed in DataCite
Supporting data for article Chopra, R, G. Burow, A. Farmer, J. Mudge, C. E. Simpson, and M. D. Burow.
Description
(in press). Comparisons of De Novo Transcriptome Assemblers in Diploid and Polyploid Species Using Peanut (Arachis spp.) RNA-Seq Data.
PLosOne Contains denovo assemblies from A. duranensis KSSc38901, A. ipaensis GKPSSc30076 and A. hypogaea cv OLin CV-75, PI631176. Assemblies were created with AByss, SOAP, and Trinity. The list of files follows.
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Files are in fasta format, gzipped using the Linux gzip command. They may be unzipped using the gunzip command. There are two files for OLin_AByss_Mmer - one (OLin_AByss_Mmer.fasta.gz) containing the kmer number and other AByss header data, and the other (OLin_AByss_Mmer_ncbi.fasta.gz) file uploaded to NCBI that was modified to omit these data, as was necessary for the NCBI software to accept the file. 30076_AByss_Mmer.fasta.gz 30076_AByss_Mmer_dedup.fasta.gz 30076_AByss_25mer.fasta.gz 30076_SOAP_25mer.fasta.gz 30076_Trinity_25mer.fasta.gz 30076_Trinity_dedup.fasta.gz 38901_AByss_Mmer.fasta.gz 38901_AByss_Mmer_dedup.fasta.gz 38901_Trinity_25mer.fasta.gz 38901_Trinity_dedup.fasta.gz 38901_AByss_25mer.fasta.gz 38901_SOAP_25mer.fasta.gz OLin_AByss_Mmer.fasta.gz OLin_AByss_Mmer_ncbi.fasta.gz OLin_AByss_Mmer_dedup.fasta.gz OLin_Trinity_25mer.fasta.gz OLin_Trinity_dedup.fasta.gz OLin_AByss_25mer.fasta.gz OLin_SOAP_25mer.fasta.gz
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Peanut_denovo_transcriptome_assembly_methods_… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1236527 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1236527 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1236527 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences · Computer and information sciences
- From keywords
- Genetics
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1236527 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |