Data and code related to "Molecular kinetics dictate population dynamics in CRISPR-based plasmid defense"

In this study, we use a time-lapse, imaging-based approach to characterize conjugative plasmid dynamics at the molecular, single-cell, and population levels. This Dataset contains code used for image analysis, bioinformatic analysis, agent-based modelling, and figure generation for "Molecular kinetics dictate population dynamics in CRISPR-based plasmid defense", as well as intermediate single-cell data processed from raw images.

See link to the publication in Related Material. Raw image data is included in the linked BioImage archive repository. Specifically, the image analysis code contained here performs segmentation, fluorescent dot detection, and cell classification to track conjugative plasmid population dynamics in microfluidic growth chambers.