Data · collection · 2006
Clone library using primers for gammaproteobacteria from an SAB treatment in the SRE4 experiment
Listed in NASA Earthdata CMR
A clone library was created from DNA extracted from an SAB-treated sample from the SRE4 in situ biodegradation experiment.
Description
The clone libary was created using one universal primer and one primer designed to be specific for the gammaproteobacteria. Sequences of approximately 600 bp were obtained.
The samples used in this experiment were collected from O'Brien Bay, near Casey Station in the Windmill Islands. Gammaproteobacteria clone library Clone library created from SRE4 T2 SAB sample using primers 10F (GAG TTT GAT CCT GGC TCA G ) and GAMR (GGT AAG GTT CTT CGC GTT GCA T). Clones sequenced on a CEQ8000 Genetic Analysis system (Beckman-Coulter) and alignments were done in BioEdit v 5.0.9.
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Text file SRE4gammaclonesalign is a text version of BioEdit file SRE4gammaclones. This work was completed as part of ASAC project 2672 (ASAC_2672).
Links
Get the data
- data.aad.gov.au /eds/1465/download ↗
Download point for the data - text and BioEdit files
download · from NASA CMR
Where it is published
- DOI doi.org/10.26179/5d4baa1262fa2 ↗
DOI / persistent id · from NASA CMR
Documentation and papers
- data.aad.gov.au /aadc/metadata/citation.cfm?entry_id=SRE4_SAB_gammaclones ↗
Citation reference for this metadata record and dataset
documentation · from NASA CMR
- Public information for ASAC project 2672 secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=2672 ↗
project · from NASA CMR
Catalogue records · 2
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C1214313841-AU_AADC.umm_json ↗
metadata API · from NASA CMR
- CMR record cmr.earthdata.nasa.gov/search/concepts/C1214313841-AU_AADC.html ↗
catalogue entry · from NASA CMR
Topics
- Stated by source
- Automated DNA Sequencer · FIELD INVESTIGATION · LABORATORY · Not provided · Oil Spills
- Inferred from text
- Environmental biotechnology 69% · Text 75%
Provenance · 1 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C1214313841-AU_AADC | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[field].anzsrc:group:4103 | enrichment · NASA CMR | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[instrument].gcmd_instrument:ads | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/human-dimensions/environmental-impacts/oil-spills | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:text | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:field-investigation | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:laboratory | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |