Data · collection · 2023
Vertebrate and plant taxa recovered from 10 catchments in Vaud using an eDNA-metabarcoding approach
Listed in NASA Earthdata CMR
This dataset contains the results of a five-day field excursion which the extent to which eDNA sampling can capture the diversity of a region with highly heterogeneous habitat patches across a wide elevation gradient through multiple hydrological catchments of the Swiss Alps.
Description
Using peristaltic pumps, we filtered 60 L of water at five sites per catchment for a total volume of 1 800 L. Using an eDNA metabarcoding approach focusing on vertebrates and plants, we detected 86 vertebrate taxa spanning 41 families and 263 plant taxa spanning 79 families across ten catchments.
This dataset includes two sets of data. The first (Genomic data) includes all the necessary data for the bioinformatic pipeline, whereas the second (Analysis Figures) contains tidied data and scripts for the reproduction of all figures/analyses in the article describing this study.
Links
Where it is published
- DOI doi.org/10.16904/envidat.409 ↗
DOI / persistent id · from NASA CMR
Documentation and papers
- VIEW RELATED INFORMATION envidat.ch/dataset/catchment-biodiversity-vaud-edna ↗
documentation · from NASA CMR
- GET RELATED VISUALIZATION envidat.ch/envidat_thumbnail.png ↗
preview image · from NASA CMR
Catalogue records · 2
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C3226081799-ENVIDAT.umm_json ↗
metadata API · from NASA CMR
- CMR record cmr.earthdata.nasa.gov/search/concepts/C3226081799-ENVIDAT.html ↗
catalogue entry · from NASA CMR
Topics
- Stated by source
- Land Surface Agriculture Indicators · Not provided
- Inferred from text
- Environmental management 74% · Genome sequencing 65%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C3226081799-ENVIDAT | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[field].anzsrc:group:4104 | enrichment · NASA CMR | taxonomy-embedding@1.1.0 | title+keywords+description (74%) |
| concepts[measured_variable].gcmd:earth-science/climate-indicators/land-surface-agriculture-indicators | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:genome-sequencing | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[platform].gcmd_platform:not-provided | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| created_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| updated_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |