Data · dataset · 2025
Repo_pr-2025-00432j
Listed in Bicocca Open Archive Research Data
Here a section of a human papillary thyroid carcinoma, analysed with MALDI-MSI and H&E stained.
Description
The dataset includes: -H&E stained WSI (ptc_core_tma_q3.tif); -ROIs (geojson); SCiLS exchange format ROIs (SEF.zip); -imzML of the differnt ROIs (imzML.zip). The ROIs were obtained using the workflow presented in "Improving the annotation for Spatial Proteomics: A computational approach to enhance molecular characterization of Thyroid Nodules" .
A detailed description and scripts can be found at github.com/Vsc0/msi-enhanced .
Links
Where it is published
- DOI doi.org/10.17632/2phgdzg9mg.1 ↗
DOI / persistent id · from board unimib it
Catalogue records · 1
- OAI-PMH record board.unimib.it/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Aboar… ↗
metadata API · from board unimib it
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Mass spectrometry · Medicine & Health · Pathology · Social Science
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Bicocca Open Archive Research Data | oai:board.unimib.it/2phgdzg9mg.1 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[field].anzsrc:field:320220 | mapping · board unimib it | vocabulary-mapper@1.0.0 | keywords['Pathology'] |
| concepts[field].local:field:earth-environmental | mapping · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[field].local:field:engineering | mapping · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[field].local:field:humanities | mapping · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[field].local:field:social-science | mapping · board unimib it | connector:board_unimib_it@1.0.0 | |
| concepts[modality].local:modality:mass-spectrometry | mapping · board unimib it | vocabulary-mapper@1.0.0 | keywords['Mass Spectrometry'] |
| description | source · board unimib it | connector:board_unimib_it@1.0.0 | /metadata/dc/description |
| license | source · board unimib it | connector:board_unimib_it@1.0.0 | /metadata/dc/rights |
| publication_date | source · board unimib it | connector:board_unimib_it@1.0.0 | |
| title | source · board unimib it | connector:board_unimib_it@1.0.0 | /metadata/dc/title |