Data · dataset · 2013
microsporidian protein families
Listed in DataCite
The file mcl_clusters_with_microsporidia.txt contains a list of microsporidian protein families.
Description
The data is part of the publication entitled: Reduction and expansion in microsporidian genome evolution: new insights from comparative genomics Sirintra Nakjang, Tom A. Williams, Eva Heinz, Andrew K. Watson, Peter G. Foster, Kacper M. Sendra, Sarah E. Heaps, Robert P. Hirt, T. Martin Embley (2013) Genome Biol Evol The data file is tab-delimited.
Each line represents a cluster of homologous proteins, where the first column denotes family names. Protein members in each family are listed from the second columns onward. An ID for each protein sequence member begins with 4 letters denoting the species coding that sequence, followed by a sequence identifier from relevant database.
Read the rest (2 more)
For example, encu_19074370_ref_NP_585876_1_ The first 4 letters denote an abbreviation of species encoding that sequence. In this case 'encu' denotes E. cuniculi. A full list of species abbreviations can be found below. 19074370 is the sequence NCBI GI number.
NP_585876 is the sequence RefSeq accession number.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/microsporidian_protein_families/834937 ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.834937 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.834937 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.834937 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Biological sciences
- From keywords
- Evolutionary biology
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.834937 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:biological-sciences | source · DataCite | connector:datacite@1.0.0 | |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |