Data · dataset · 2014
Beads convolution/deconvolution simulation
Listed in DataCite
Simulation of beads acquired with a 100x / 1.4 NA objective, the pixel size is 65 nm and the Z spacing is 200 nm.
Description
This is a simple "pixelated" simulation. Beads were 3 to 4 voxels laterally and 1 voxel axially.
They were convolved with a PSF generated using the above parameters and assuming an embedding media of RI=1.4 and a depth below coverslip of 1 micron. Simulated phantom was convolved with PSF to produce a simluated "image", then deconvolved with 200 iterations of noncirculant Richardson Lucy. Low level code was written in Java (deconvolution, psf generation).
Read the rest (1 more)
High level code was written in Jython and can be found here - github.com/bnorthan/projects/tree/master/Scripts/Jython.
Links
Where it is published
- Repository landing page figshare.com/articles/dataset/Beads_convolution_deconvolution_simulation/10… ↗
landing page · from DataCite
- DOI doi.org/10.6084/m9.figshare.1002167 ↗
DOI / persistent id · from DataCite
Documentation and papers
Catalogue records · 2
- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1002167 ↗
metadata API · from DataCite
- DataCite Commons commons.datacite.org/doi.org/10.6084/m9.figshare.1002167 ↗
catalogue entry · from DataCite
Topics
- Stated by source
- Computer and information sciences
- Inferred from text
- Image 75% · Simulation 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1002167 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| byte_size | source · DataCite | connector:datacite@1.0.0 | |
| concepts[field].fos:computer-and-information-sciences | source · DataCite | connector:datacite@1.0.0 | |
| concepts[method].local:method:simulation | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:image | enrichment · DataCite | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · DataCite | connector:datacite@1.0.0 | |
| description | source · DataCite | connector:datacite@1.0.0 | /data/attributes/descriptions |
| license | source · DataCite | connector:datacite@1.0.0 | /data/attributes/rightsList |
| publication_date | source · DataCite | connector:datacite@1.0.0 | /data/attributes/dates |
| title | source · DataCite | connector:datacite@1.0.0 | /data/attributes/titles/0/title |
| updated_date | source · DataCite | connector:datacite@1.0.0 |