Omics · study · 2026
Effect of in vitro dolutegravir exposure on transcriptome of oligodendrocyte precursor cells and oligodendrocytes
Listed in NCBI GEO
In this study, we demonstrated that exposing primary rat oligodendrocyte precursor cells and oligodendrocytes to dolutegravir during both proliferation and differentiation impaired oligodendrocyte maturation and myelin protein production.
Description
Bulk RNA sequencing revealed that dolutegravir exposure does not significantly alter the transcriptome of oligodendrocyte precursor cells compared to DMSO treatment. Conversely, we identified transcriptional changes after dolutegravir exposure in mature oligodendrocytes related to a variety of cellular mechanisms, including cellular responses to stress pathways, amino acid starvation, and mitochondrial dysfunction.
In particular, differential gene expression analyses revealed 127 significantly altered transcripts in dolutegravir treated oligodendrocytes, with 3 of these being Trib3, Atf4, and Cebpb, which have interconnected roles in regulating the integrated stress response.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE290nnn/GSE290215 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE290215 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1226589 ncbi.nlm.nih.gov/bioproject/PRJNA1226589 ↗
project · from NCBI GEO
- PubMed 41904696 pubmed.ncbi.nlm.nih.gov/41904696 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE290215 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |