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Data · dataset · 2023

A Distributed Data Processing Scheme Based on Hadoop for Synchrotron Radiation Experiments

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This  research presents a case study on synchrotron radiation biomolecular crystallography to illustrate a beamline distributed data processing scheme based on the Hadoop ecosystem.We build a distributed file storage system for experimental crystallography data based on Hadoop HDFS.

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Additionally, we develop a resource scheduling system for the cluster using Hadoop YARN. Furthermore, we design and develop a distributed automated data processing pipeline(Spark-DIALS) for crystallography by combining Hadoop Spark and DIALS. The dials_spot_finder.py and dials_integrate_run.py contain the source code transforming the spots finding and integrate of original DIALS.Moreover, the solution utilizes FastAPI to deploy each functional module in a distributed microservice architecture.There are primarily microservices related to Spark distributed automatic processing jobs and HBase data table operations(sparkJobApi.py&hbaseApi.py).

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ScienceDB10.57760/sciencedb.j00186.0031212 d agoJSON v1
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