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Data · dataset · 2018

Replication data for: Complete genome sequence of a potyvirus infecting yam beans (Pachyrhizus spp.) in Peru

Listed in International Potato Center

Towards the end of 2010, viral disease symptoms (mosaic with or without leaf deformation) were observed in a yam bean field trial at the CIP research station in San Ramon, Junin, Peru (wet tropics, 800 masl).

Description

The disease could be graft transmitted, and based on symptoms, an infection by the potyvirus bean common mosaic virus (BCMV) was suspected. Plants were tested by NCM-ELISA using potyvirus-specific antibodies (Agdia CAB 27200), to which all symptomatic plants reacted positively, whereas symptomless greenhouse-grown plants did not react.

Small interfering RNA (siRNA) sequencing (Provider: Fasteris Life Sciences SA, Plan-les-Ouates, Switzerland) and assembly were performed on a sample (P. tuberosus accession CIP209014) showing severe mosaic and leaf deformation as described by Kreuze et al., except that the reads were assembled using Velvet’s Assembly Assembler (v1.1)

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Where it is published

Catalogue records · 1

Topics

Stated by source
Agricultural Sciences
From keywords
Life Sciences
Inferred from text
Disease 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
International Potato Centerdoi:10.21223/P3/H05A0F12 d agoJSON v1
FieldAssertionExtractorEvidence
concepts[disease].local:disease:diseaseenrichment · data cipotato orgkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].dataverse_subject:agricultural-sciencessource · data cipotato orgconnector:data_cipotato_org@1.0.0/subjects
concepts[field].local:field:life-sciencesmapping · data cipotato orgconnector:data_cipotato_org@1.0.0/subjects
concepts[modality].local:modality:sequencingenrichment · data cipotato orgkeyword-concept-rules@1.0.0title+description (75%)
created_datesource · data cipotato orgconnector:data_cipotato_org@1.0.0
descriptionsource · data cipotato orgconnector:data_cipotato_org@1.0.0/description
publication_datesource · data cipotato orgconnector:data_cipotato_org@1.0.0
titlesource · data cipotato orgconnector:data_cipotato_org@1.0.0/name
updated_datesource · data cipotato orgconnector:data_cipotato_org@1.0.0
version_labelsource · data cipotato orgconnector:data_cipotato_org@1.0.0