Data · dataset · 2015
ATG5-knockout mutants of Physcomitrella provide a platform for analyzing the involvement of autophagy in senescence processes in plant cells
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Autophagy is a pathway in which a cell degrades part of its cytoplasm in vacuoles or lysosomes.
Description
To identify the physiological functions of autophagy in plants, we disrupted ATG5 , an autophagy-related gene, in Physcomitrella , and confirmed that atg5 mutants are deficient in the process of autophagy. On carbon or nitrogen starvation medium, atg5 colonies turned yellow earlier than the wild-type (WT) colonies, showing that Physcomitrella atg5 mutants, like yeast and Arabidopsis , are sensitive to nutrient starvation.
In the dark, even under nutrient-sufficient conditions, colonies turned yellow and the net degradation of chlorophyll and Rubisco protein occurred together with the upregulation of several senescence-associated genes. Yellowing reactions were inhibited by the protein synthesis inhibitor cycloheximide, suggesting that protonemal colonies undergo dark-induced senescence like the green leaves of higher plants. Such senescence responses in the dark occurred earlier in atg5 colonies than WT colonies.
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The sugar content was almost the same between WT and atg5 colonies, indicating that the early-senescence phenotype of atg5 is not explained by sugar deficiency. However, the levels of 7 amino acids showed significantly different alteration between atg5 and WT in the dark: 6 amino acids, particularly arginine and alanine, were much more deficient in the atg5 mutants, irrespective of the early degradation of Rubisco protein.
On nutrient-sufficient medium supplemented with casamino acids, the early-senescence phenotype was slightly moderated. We propose that the early-senescence phenotype in atg5 mutants is partly explained by amino acid imbalance because of the lack of cytoplasmic degradation by autophagy in Physcomitrella .
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- Repository landing page tandf.figshare.com/articles/dataset/_i_ATG5_i_knockout_mutants_of_i_Physcomitrell… ↗
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- DOI doi.org/10.6084/m9.figshare.1569467 ↗
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Documentation and papers
- Creative Commons Attribution 4.0 International creativecommons.org/licenses/by/4.0/legalcode ↗
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- IsSupplementTo 10.1080/15592324.2015.1086859 doi.org/10.1080/15592324.2015.1086859 ↗
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- DataCite API api.datacite.org/dois/10.6084/m9.figshare.1569467 ↗
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Topics
- Stated by source
- Biological sciences · Clinical medicine
- From keywords
- Biochemistry and cell biology · Cancer · Genetics · Microbiology
Related
- Inverse of has versionATG5 -knockout mutants of Physcomitrella provide a platform for analyzing the involvement of autophagy in senescence processes in plant cells
- Inverse of has versionATG5 -knockout mutants of Physcomitrella provide a platform for analyzing the involvement of autophagy in senescence processes in plant cells
- Inverse of has versionATG5 -knockout mutants of Physcomitrella provide a platform for analyzing the involvement of autophagy in senescence processes in plant cells
- Inverse of has versionATG5 -knockout mutants of Physcomitrella provide a platform for analyzing the involvement of autophagy in senescence processes in plant cells
Provenance · 1 source records, 11 field assertions
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|---|---|---|---|
| DataCite | 10.6084/m9.figshare.1569467 | 11 d ago | JSON v1 |
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