Data · dataset
[Chemotaxis of P. haloplanktis towards exudates of Synechoccocus] - Chemotaxis of P. haloplanktis towards exudates of phage-infected and control Synechoccocus (VIC project) (Collaborative Research: Viral induced chemotaxis mediating cross-trophic microbial interactions and carbon flux)
Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP
This data set summarises the chemotactic response of a model marine bacteria (Pseudoalteromonas haloplanktis ATCC 700530) to filtered exudates of the cyanobacteria Synechococcus sp WH8102.
Description
Two filtrate sets were collected, each spanning 6 time points (named T1 -> T6), with the initial assays split into 4 biological replicates (named A,B,C,D). The two treatments were: 1) A control treatment (named "Control", or shortened to "C") 2) A phage-infected treatment (named "Phage", or shortened to "P"), where host Synechococcus were infected with the T-4 like Myovirus S-SSM5, with data collected over the pre-lysis cycle.
These treatments are fully described in: doi.org/10.1038/s43705-022-00169-6. At both time points, statistically significant preference was measured towards the phage-infected exudates by analyzing the cell distribution across a microfluidic channel.
Links
Where it is published
- ERDDAP dataset info erddap.bco-dmo.org/erddap/info/bcodmo_dataset_913620_v1/index.html ↗
landing page · from erddap bco dmo org
Catalogue records · 1
- ERDDAP tabledap access form erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_913620_v1.html ↗
metadata API · from erddap bco dmo org
Topics
- From keywords
- Ocean & Atmospheric Science
- Inferred from text
- Environmental biotechnology 69%
Provenance · 1 source records, 5 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP | bcodmo_dataset_913620_v1 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[field].anzsrc:group:4103 | enrichment · erddap bco dmo org | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:ocean-atmospheric | mapping · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| description | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /summary |
| title | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /title |