Omics · study · 2026
Transcriptomic Signatures Confirm Conserved Molecular Responses to Glucocorticoid Receptor Agonists in Fathead Minnow (Pimephales promelas)
Listed in NCBI GEO
In this study, fathead minnow larvae were exposed to eight concentrations of two glucocorticoid receptor agonists, dexamethasone and fluticasone, and assessed transcriptome-wide gene expression changes using RNA-seq.
Description
Differential gene expression analysis revealed substantial overlap in affected genes between the two compounds, supporting their shared mechanism of action. Transcriptomic points of departure (tPODs) were calculated to identify concentrations at which early transcriptomic responses would likely occur.
Functional enrichment analysis identified activated biological pathways and enabled the calculation of biological pathway altering concentrations (BPACs). Both compounds significantly altered pathways related to glucocorticoid activity, with fluticasone showing higher potency in most of the pathways. The significant overlap in differentially expressed genes and enriched pathways provides evidence that transcriptomic profiling can effectively detect shared mechanisms of action between related compounds.
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These findings support the utility of RNA-seq data in read-across approaches for chemical risk assessment and highlight the conserved molecular responses to glucocorticoid receptor activation in fathead minnows.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE294nnn/GSE294459 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294459 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1247485 ncbi.nlm.nih.gov/bioproject/PRJNA1247485 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE294459 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |