Imaging · dataset · 2017
Microscopy image files for "An allosteric theory of transcription factor induction."
Listed in CaltechDATA
These data correspond to the raw microscopy images used to quantify fluorescence and compute the fold-change in gene expression due to the activity of the Lac repressor molecule in E. coli cells.
Description
These images were passed through an image analysis pipeline which segmented individual cells and computed the mean pixel value for each cell. This information was then used to compute the population average to be used in the determination of fold-change.
These data are separated by the operator we examined. Eight different strains were measured for each dataset. Please see the main text or the paper website at rpgroup-pboc.github.io/mwc_induction for more information.
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Note that each image file has its own folder. These folder names are correct fore each collected image, however the image name differs on a few occasions. "
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/csbm4-4rm70 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.229 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/csbm4-4rm70 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- Biophysics · images · microscopy · physical biology · Transcriptional Regulation
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Image · Life Sciences · Microscopy · Social Science
- Inferred from text
- Biochemistry and cell biology 73% · Text 75%
Provenance · 1 source records, 20 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | csbm4-4rm70 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · data caltech edu | taxonomy-embedding@1.0.0 | title+keywords+description (73%) |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[modality].local:modality:image | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['images'] |
| concepts[modality].local:modality:microscopy | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['microscopy'] |
| concepts[modality].local:modality:text | enrichment · data caltech edu | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[topic].invenio_subject:data_caltech_edu:biophysics | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:images | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:microscopy | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:physical-biology | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:transcriptional-regulation | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |