Omics · study · 2026
SbmC limits the mutation rate of Escherichia coli
Listed in NCBI GEO
DNA damage induces the mutations that drive bacterial adaption, evolution, and antibiotic escape.
Description
Both mutagenic and non-mutagenic DNA damage repair is coordinated by the SOS response, but despite extensive work, the functions of some SOS-induced genes remain obscure. Here, we clarify the function of Escherichia coli SbmC (GyrI).
Despite its proposed function as a gyrase inhibitor, cells either lacking or overexpressing SbmC instead exhibit phenotypes consistent with a role in limiting DNA damage and cellular variation. Importantly, SbmC levels inversely correlate with E. coli mutation rate. Excess SbmC limits mutation whereas loss of SbmC increases mutation, possibly because ∆sbmC cells variably induce the SOS response, including mutagenic DNA Pol V. We additionally show that SbmC is dispensable for survival in the presence of double-strand break inducing drugs but is required to limit their mutational effects.
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Finally, evolutionary analysis indicates that bacterial SbmC homologs maintain their small molecule-binding domain but not the gyrase interacting residues identified in E. coli. Together, our findings suggest that SbmC-like proteins may bind to a yet-unknown cofactor to limit DNA damage and organismal evolution.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324174 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324174 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1433563 ncbi.nlm.nih.gov/bioproject/PRJNA1433563 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Genetics 69%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324174 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |