Data · dataset · 2026
End-to-End Opportunistic CT Body Composition Profiling & Interpretable Diabetes Risk Prediction Suites
Listed in ScienceDB
This dataset and software package are the official supporting entities for the academic paper "An End to End Opportunistic CT Body Composition Analysis Pipeline with Temporary and Multi vendor Validation and an Exploratory Diabetes Application".
Description
This resource integrates a complete computational pipeline for opportunistic body composition analysis and metabolic risk assessment based on conventional non enhanced computed tomography (NCCT) of the abdomen, aiming to provide an out of the box, transparent, and interpretable engineering tool for the transformation of medical imaging informatics research and clinical opportunistic screening. The compressed package mainly includes the following core components: App 1: L3 level anatomical structure AI automatic segmentation and PACS archiving system: a lightweight interactive software built on Streamlit.
The system integrates TotalSegmentor to achieve 3D automatic positioning and central slice extraction of L3 vertebral bodies. Through 2D nnU Net, high-precision joint semantic segmentation of vertebral trabecular bone, subcutaneous fat (SAT), visceral fat (VAT), and skeletal muscle is achieved, and skeletal muscle index (SMI), subcutaneous/visceral fat index (SATI/VATI), visceral to subcutaneous fat ratio (VAT/SAT Ratio), and average tissue attenuation (HU) are automatically extracted.
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The software has a built-in Chinese healthy population reference distribution (Kong et al., 2022), supports the generation of one page A4 academic three line table reports (PDF), and has secondary capture (SC) encapsulation that complies with DICOM 3.0 standards and a one click PACS return function based on C-STORE services. App 2: CT body composition risk prediction of diabetes and SHAP interpretable Kanban: combined with multi center retrospective cohort and multi factor logistic regression model, the risk probability of type 2 diabetes in patients was automatically evaluated according to the input body composition characteristics.
The Kanban board integrates individualized dynamic column plots (Waterfall Plot) based on SHAP (Shapley Additive exPlanations) and global feature influence distribution plots (Beeswarm Plot), achieving complete transparency attribution of metabolic phenotype push-pull effects. Pre trained model weights and benchmark dataset: including optimized Total Segmentor L3 localization weights, 2D nnU Net four tissue segmentation checkpoints (checkpoint_final.pth, dataset.rson, plans. json), and a benchmark data table (shap. csv) for generating global SHAP feature distributions. This software suite supports single machine portable operation and edge deployment of medical institutions' local area networks (LANs), and is compatible with Windows 10/11 64 bit environments.
The calculation indicators and risk assessment of this resource are based on specific scientific research queues and are only for reference in medical imaging informatics research, algorithm technology reproduction, and opportunistic screening evaluation. They do not constitute direct clinical medical diagnostic basis.
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.011su ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Computer Science & AI · Earth & Environmental Science · Engineering · Humanities · Life Sciences · Social Science
- Inferred from text
- Biomedical engineering 71% · Computed tomography 75% · Imaging 75% · Tabular 65%
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.011su | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:4003 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:computer-science-ai | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:ct | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:imaging | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |