Omics · study · 2026
Transcriptomic analysis of NvpaxA knockdown in Nematostella vectensis
Listed in NCBI GEO
To investigate the role of NvpaxA in cnidocyte gene regulatory networks, bulk mRNA sequencing was performed on gastrula-stage Nematostella vectensis embryos (28 hours post fertilization at 24°C) following RNAi-mediated NvpaxA knockdown.
Description
Four paired experimental (NvpaxA shRNA) and scramble RNA control replicates were sequenced. Each replicate consisted of approximately 1000 injected embryos.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335079 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335079 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1477374 ncbi.nlm.nih.gov/bioproject/PRJNA1477374 ↗
project · from NCBI GEO
- PubMed 42427843 pubmed.ncbi.nlm.nih.gov/42427843 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335079 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |