Data · dataset
[Alteromonas MIT1002 EV Transcriptome] - NCBI accession metadata for transcriptomic expression sequences from cultures of Alteromonas macleodii MIT1002 grown with bacterial extracellular vesicles as a carbon source (Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption)
Listed in Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP
To examine how marine bacteria utilize extracellular vesicles as a nutrient source, we compared the transcriptomic response of Alteromonas macleodii MIT1002 cells grown on purified extracellular vesicles (purified from Alteromonas MIT1002 or Prochlorococcus MIT9312) as compared to glucose or a no-carbon control.
Description
Our study provides insights into the cellular mechanisms through which these cells may take up extracellular vesicle material and the specific types of molecules within vesicles that can be utilized for carbon and/or energy.
This dataset contains accession metadata for sequences run from cultures of Alteromonas macleodii MIT1002. Data were collected by Dr. Ashley Stein and Dr.
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Steven Biller, Wellesley College. The raw RNAseq reads have been deposited in the National Center for Biotechnology Information (NCBI) GEO database under accession GSE314643.
Links
Where it is published
- ERDDAP dataset info erddap.bco-dmo.org/erddap/info/bcodmo_dataset_997637_v1/index.html ↗
landing page · from erddap bco dmo org
Catalogue records · 1
- ERDDAP tabledap access form erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_997637_v1.html ↗
metadata API · from erddap bco dmo org
Topics
- From keywords
- Ocean & Atmospheric Science
- Inferred from text
- Environmental biotechnology 72% · RNA sequencing 65%
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Biological and Chemical Oceanography Data Management Office (BCO-DMO) ERDDAP | bcodmo_dataset_997637_v1 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[field].anzsrc:group:4103 | enrichment · erddap bco dmo org | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:ocean-atmospheric | mapping · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · erddap bco dmo org | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /summary |
| title | source · erddap bco dmo org | connector:erddap_bco_dmo_org@1.0.0 | /title |