Imaging · dataset · 2026
OpenTME
Listed in Hugging Face Datasets
OpenTME: Open-Access Tumor Microenvironment Profiles from TCGA OpenTME is an open-access project by Aignostics for academic researchers.
Description
It provides comprehensive spatial outputs for whole slide images (WSIs) of H&E-stained, formalin-fixed, paraffin-embedded slides from The Cancer Genome Atlas (TCGA). OpenTME is powered by Atlas H&E-TME – a computational pathology application developed by Aignostics.
Atlas H&E-TME Atlas H&E-TME is a foundation model-based… See the full description on the dataset page: huggingface.co/datasets/Aignostics/OpenTME.
Links
Get the data
- Hugging Face dataset page huggingface.co/datasets/Aignostics/OpenTME ↗
Gated (manual) - request access on the dataset page
landing page · request access · from Hugging Face
Documentation and papers
- arXiv:2604.12075 arxiv.org/abs/2604.12075 ↗
publication · from Hugging Face
Catalogue records · 1
- Hub API huggingface.co/api/datasets/Aignostics/OpenTME ↗
metadata API · from Hugging Face
Topics
- Stated by source
- image · image classification · image feature extraction · image segmentation · object detection
- From keywords
- Cancer · Computer Science & AI · Life Sciences · Pathology
- Inferred from text
- Image 65%
Provenance · 1 source records, 16 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Hugging Face Datasets | Aignostics/OpenTME | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · Hugging Face | connector:huggingface@1.0.0 | /gated |
| concepts[disease].local:disease:cancer | mapping · Hugging Face | vocabulary-mapper@1.0.0 | keywords['cancer'] |
| concepts[field].local:field:computer-science-ai | mapping · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · Hugging Face | vocabulary-mapper@1.0.0 | keywords['biology'] |
| concepts[modality].hf_modality:image | source · Hugging Face | connector:huggingface@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · Hugging Face | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[task].hf_task:image-classification | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| concepts[task].hf_task:image-feature-extraction | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| concepts[task].hf_task:image-segmentation | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| concepts[task].hf_task:object-detection | source · Hugging Face | connector:huggingface@1.0.0 | /tags[task_categories:*] |
| created_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| description | source · Hugging Face | connector:huggingface@1.0.0 | /description |
| license_text | source · Hugging Face | connector:huggingface@1.0.0 | |
| publication_date | source · Hugging Face | connector:huggingface@1.0.0 | |
| title | source · Hugging Face | connector:huggingface@1.0.0 | /id |
| updated_date | source · Hugging Face | connector:huggingface@1.0.0 |