Omics · study · 2026
The pth gene as a clinical biomarker for bacterial antibiotic tolerance
Listed in NCBI GEO
Persister cells pose severe threats and serve as the primary driver of chronic and recurrent infections.
Description
Nevertheless, clinical laboratories rarely quantify persister fractions of pathogenic bacteria at present, due to limited detection approaches and scarce available detection biomarkers. In our prior study, we identified a transposon insertion mutant of the essential gene pth, which exhibited drastically elevated persister levels.
We further discovered seven distinct point mutations of pth among clinical isolates, among which the G103S variant completely abolished the full activity of wild-type Pth protein. Quantification of persister fractions in clinical strains revealed that isolates carrying the G103S mutation harbored significantly higher persister proportions than wild-type counterparts. This mutation can act as a biomarker for evaluating persister levels in clinical bacterial isolates.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337979 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337979 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1492041 ncbi.nlm.nih.gov/bioproject/PRJNA1492041 ↗
project · from NCBI GEO
- PubMed 42654812 pubmed.ncbi.nlm.nih.gov/42654812 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
Provenance · 1 source records, 6 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337979 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |