Data · dataset · 2024
BioCyc: Genome Database Collection
Listed in UC Berkeley Library Dataverse
BioCyc is a collection of 19534 [as of 2021] Pathway/Genome Databases (PGDBs), plus software tools for understanding their data.
Description
It allows users to visualize the layout of genes within a chromosome, or of an individual biochemical reaction, or of a complete biochemical pathway. BioCyc provides a reference on the genomes and metabolic pathways of thousands of sequenced organisms.
BioCyc PGDBs are generated by software that predict the metabolic pathways of completely sequenced organisms, predict which genes code for missing enzymes in metabolic pathways, and predict operons. BioCyc also integrates information from other bioinformatics databases, such as protein feature and Gene Ontology information from UniProt. The BioCyc website provides a suite of software tools for database searching and visualization, for omics data analysis, and for comparative genomics and comparative pathway questions.
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Access the data by visiting: BioCyc.
Links
Where it is published
- Dataverse dataset page datasets.lib.berkeley.edu/dataset.xhtml?persistentId=doi%3A10.60503%2FD3%2FKFBE6C ↗
landing page · from datasets lib berkeley edu
- DOI doi.org/10.60503/d3/kfbe6c ↗
DOI / persistent id · from datasets lib berkeley edu
Catalogue records · 1
- Dataverse API datasets.lib.berkeley.edu/api/datasets/:persistentId/?persistentId=doi%3A10.60503%2FD3%2… ↗
metadata API · from datasets lib berkeley edu
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Life Sciences · Medicine & Health
- Inferred from text
- Medical biochemistry and metabolomics 70%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| UC Berkeley Library Dataverse | doi:10.60503/D3/KFBE6C | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3205 | enrichment · datasets lib berkeley edu | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | /subjects |
| created_date | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | |
| description | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | /description |
| publication_date | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | |
| title | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | /name |
| updated_date | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 | |
| version_label | source · datasets lib berkeley edu | connector:datasets_lib_berkeley_edu@1.0.0 |